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| VBI Microbial Database |
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| Category | Phytophthora sojae | Phytophthora ramorum | Hyaloperonospora parasitica |
| No. of Scaffolds | 1810 | 2576 | 6000 |
| Assembly comparison | text | image | ||
| Total No. of Gaps | 2298 | 3831 | |
| No. of Scaffolds having genes | 816 | 1800 | 2416 |
| No. of Scaffolds not having genes | 994 | 776 | 3584 |
| Average scaffold length | View Graph | View Text | View Graph | View Text | View Graph | View Text |
| Average Gap length | |||
| Total number of genes | 19027 | 15743 | 14726 |
| Percentage of ESTs matching genome | 67% | ||
| Total number of exons | 53556(2.81exons/gene) | 40640(2.58exons/gene) | |
| Total number of introns | 11529 | 8445 | |
| Average length of genes | |||
| Gene Density | 1 gene per 2335.9 bases | 1 gene per 1819.8 bases | 1 gene per 1819.8 bases |
| Coding percentage | 43.054% | 47.359% |
| Category | Phytophthora sojae | Phytophthora ramorum |
| Total base number | 78050814 | 54424536 |
| A (Overall) | 17774863 (0.227734) | 12564289 (0.230857) |
| T(Overall) | 17781686 (0.227822) | 12547755 (0.230553) |
| G(Overall) | 21227592 (0.271971) | 14661917 (0.269399) |
| C(Overall) | 21266673 (0.272472) | 14650575 (0.269191) |
| G+C/A+T(Overall) | 1.195 | 1.167 |
| A(Coding) | 6306143 ( 0.216288) | 5013210 (0.222901) |
| T(Coding) | 5453288 (0.187037) | 4431675 (0.197045) |
| G(Coding) | 8944045(0.306763) | 6757447 (0.300455) |
| C(Coding) | 8452736(0.289912) | 6288365 (0.279599) |
| G+C/A+T(Coding) | 1.479 | 1.381 |
| CG | 6152718 (0.078830) | 4124881(0.075791) |
| GG | 4732680 (0.060636) | 3180721(0.058443) |
| GC | 6491822(0.083174) | 4391287(0.080686) |
| CA | 5409236(0.069304) | 3913741(0.071911) |
| AT | 3745999(0.047994) | 2659898(0.048873) |
| TT | 4332456(0.055508) | 3087302(0.056726) |
| TG | 5390473(0.069064) | 3912181(0.071883) |
| AC | 4750126(0.060859) | 3365188(0.061832) |
| CT | 4961109(0.063563) | 3432662 ( 0.063072) |
| AG | 4951721(0.063442) | 3444134(0.063283) |
| GT | 4742122(0.060757) | 3367893(0.061882) |
| TA | 2777642(0.035588) | 1833463 (0.033688) |
| TC | 5281115(0.067663) | 3714809(0.068256) |
| GA | 5260968(0.067404) | 3722016(0.068389) |
| CC | 4743609(0.060776) | 3179290(0.058416) |
| AA | 4327017(0.055438) | 3095069(0.056869) |
| PhytophthoraDB Copyright Virginia Bioinformatics Institute @ 2004 |
Comments/questions: sutripa@vbi.vt.edu |
